Lilly Posted October 4, 2026

Sr. Engineer - Process (Oligonucleotides)

Houston, Texas, United States of America FULL_TIME
Notify me about similar jobs

Lilly is the source of truth for this posting and owns the application process. We surface normalized context and market comparison you won't find on the original listing.

About this opportunity

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work, but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.

Lilly is constructing an advanced manufacturing facility in Houston, TX, for the production of API molecules, supporting current and future products, including new modalities. The Senior Process Engineer provides technical support and engineering expertise for oligonucleotide API manufacturing operations. The role may serve as the front-line process engineer for a process team or support front-line process engineers, sustaining process knowledge and contributing to process optimization, equipment qualification, and continuous improvement. During the project delivery and startup phase (expected 2029–2030), the role will be fluid and dynamic, requiring significant collaboration and creativity as the site scales to full GMP manufacturing operations.

Responsibilities:

The role holder will be, at a minimum, responsible for the following:

Serve as the front-line process engineer and equipment asset steward for a process team, or support front-line process engineers, in fundamental engineering activities for oligonucleotide API supply, including root cause analysis, process documentation, and technical decision-making, with a regular, active presence on the shop floor where the work occurs.

Capture and maintain process knowledge artifacts, including the Operational Control Strategy, material and energy balances, reaction kinetics, chemistry, and equipment design basis, and understand how equipment impacts related process parameters to support process capability and informed engineering decisions.

Support the qualification of equipment and process systems, including contributing to User Requirements, Design Review documentation, and Verification test plans, and support return-to-service requirements following maintenance or other interventions so that qualification state is preserved.

Ensure the correct application of Engineering Design Standards, Engineering Functional Standards, and Engineering Specifications, in partnership with the Engineering Tech Center.

Provide engineering support for Process Safety Management (PSM) and Process Hazard Reviews (PHRs), including maintaining the basis of safety for process equipment.

Apply statistical thinking and data-driven analysis to monitor process performance, cycle time, throughput, and equipment reliability, identifying bottlenecks and causes of downtime, and contribute to mechanistic modelling and process simulation for current and future processes.

Support the tech transfer of new processes and unit operations, helping identify process knowledge gaps and implementing continuous improvement opportunities as a core member of the cross-functional process team.

Basic Qualifications:

Bachelor’s degree in Chemical, Biochemical, or Mechanical Engineering, or a related applicable STEM discipline.

Minimum of 3 years of experience in GMP manufacturing unit operations.

Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.

Additional Skills/ Preferences:

Previous experience in an API production environment, ideally in oligonucleotide manufacturing or comparable unit operations such as solid phase peptide synthesis, small molecule API chemical synthesis, or biologics downstream purification including preparative chromatography, ultrafiltration/diafiltration, and lyophilization.

Proven ability to coach others in the development of technical knowledge and skills.

Proven ability to work independently and as part of a cross-functional process team comprising management, production, science, and engineering professionals.

Proven ability to identify improvement opportunities and drive them through to implementation with creativity and initiative.

Prior work with statistical analysis methods and process simulation or mechanistic modelling tools applicable to chemical or biochemical manufacturing.

Willingness to adapt to a fluid, dynamic role during facility startup and scale-up to full GMP manufacturing operations.

Project Management & Process Design.

Additional Information:

This position is associated with a new advanced manufacturing facility currently under construction; startup is expected between 2029 and 2030. During the project design and delivery phase, the role may partner with the corporate Global Facilities Delivery (GFD) organization on facility and equipment delivery, and transitions to a fully site-based engineering function upon project completion.

During the startup phase, role scope and responsibilities will be fluid and may evolve as the organization, facility, and site culture are built out.

Position Location: US: Houston TX.

Travel Percentage (%): Travel up to 20% of the time; may include domestic and/or international travel.

Shift Information: Regular floor presence is expected across all production shifts (day, night, and weekend) in support of a 24/7 manufacturing operation; the role may include on-call or off-hours support, with specific coverage arrangements defined as the site support model is established.

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form ( https://careers.lilly.com/us/en/workplace-accommodation ) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.

Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).

Actual compensation will depend on a candidate’s education, experience, skills, and geographic location.  The anticipated wage for this position is

$67,500 - $173,800

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

#WeAreLilly

Job details

Seniority
Senior
Function
Manufacturing & CMC
Therapeutic area
Not listed
Location
Houston, Texas, United States of America
Employment type
FULL_TIME

How this role compares

Computed from every other active Manufacturing & CMC role in our database, not just this employer's listings.

We currently track 687 comparable Senior Manufacturing & CMC roles across 84 biopharma companies.

687Comparable roles tracked
617Currently active
84Companies hiring similar roles
36Countries represented

Salary context

268 of 687 peers report a salary range (USD, annualized)

Peers share this role's job function and a matching or adjacent seniority level -- not necessarily the same therapeutic area or country.

This roleSubject $67,500/yr – $173,800/yr
Lowest disclosed · Senior Technician Calibration - Maintenance · Mylan Technologies, Inc. $37,000/yr – $80,000/yr
Highest disclosed · Principal Scientist, Oral Formulation Sciences · Merck $173,200/yr – $272,600/yr
Peer group range $58,500 – $222,900 (median $151,700)

Where these roles are based

Top locations among the 687 comparable roles

United States460
India35
Ireland28
Netherlands24
United Kingdom15
Switzerland12

+ 30 more countries

Seniority mix

687 of 687 peers have a known seniority level

Senior430
Principal138
Associate Director119

Therapeutic area mix

6 of 687 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden

Vaccines & Infectious Disease3
Oncology2
Dermatology & Aesthetics1

Similar opportunities

The closest matches from our peer group, ranked by how similar they are, not how well you'd qualify for them -- treat this as market context, not a guaranteed shortlist; a weak match is labeled as one below.

60%similar
AbbVie North Chicago, IL Senior
Same function Same seniority Same country
60%similar
AbbVie North Chicago, IL Senior
Same function Same seniority Same country
60%similar
AbbVie North Chicago, IL Senior
Same function Same seniority Same country
60%similar
AbbVie North Chicago, IL Senior
Same function Same seniority Same country
60%similar
AbbVie North Chicago, IL Senior
Same function Same seniority Same country
60%similar
Gilead Sciences, Inc. Foster City, United States Senior
Same function Same seniority Same country

Notify me about similar jobs

Get an email when we spot other openings like this one – same job function, comparable seniority, roles you'd actually want to see.

Or follow a whole field: get every new Manufacturing & CMC job in the United States, and choose locations and companies.

How we calculate "similar"

No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.

Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.

60%
Senior Scientist II - Biologics Drug Product Development
AbbVie · North Chicago, IL · Senior
Function Therapeutic area Seniority Country
60%
Senior Scientist I - Peptide Analytical Chemistry
AbbVie · North Chicago, IL · Senior
Function Therapeutic area Seniority Country
60%
Senior Electrical Engineer
Pfizer · Andover, United States · Senior
Function Therapeutic area Seniority Country
60%
Sr. Equipment Engineer
RayzeBio, Inc · Indianapolis, United States · Senior
Function Therapeutic area Seniority Country
Unmatched or unknown dimensions score exactly the same: 0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.