Merck KGaA Posted November 12, 2026

Senior Scientist Nucleoside Chemistry

Billerica, Massachusetts, United States Full time
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Merck KGaA is the source of truth for this posting and owns the application process. We surface normalized context and market comparison you won't find on the original listing.

About this opportunity

Work Your Magic with us!  Start your next chapter and join EMD Serono.

Ready to explore, break barriers, and discover more? We know you’ve got big plans – so do we! Our colleagues across the globe love innovating with science and technology to enrich people’s lives with our solutions in Healthcare, Life Science, and Electronics. Together, we dream big and are passionate about caring for our rich mix of people, customers, patients, and planet. That's why we are always looking for curious minds that see themselves imagining the unimaginable with us.

United As One for Patients, our purpose in Healthcare is to help create, improve and prolong lives. We develop medicines, intelligent devices and innovative technologies in therapeutic areas such as Oncology, Neurology and Fertility. Our teams work together across 6 continents with passion and relentless curiosity in order to help patients at every stage of life. Joining our Healthcare team is becoming part of a diverse, inclusive and flexible working culture, presenting great opportunities for personal development and career advancement across the globe.

This role does not offer sponsorship for work authorization. External applicants must be eligible to work in the US.

Your Role:

The Oligonucleotide Therapeutics group of EMD Serono in Billerica, MA, is seeking a highly motivated and collaborative Senior Scientist to lead the design and synthesis of nucleoside-based molecules and conjugates that improve intracellular delivery, with a particular focus on endosomal escape agents. The successful candidate will utilize their strong synthetic chemistry expertise, sound judgment in molecular design, and their ability to work closely with Oligonucleotide synthesis, analytical, and formulation colleagues to advance promising concepts from early discovery through lead optimization. This role is intended for an experimental nucleoside and medicinal chemist who combines a strong foundation in and hands-on experience in the synthesis of novel nucleoside analogs, peptide and small molecules. In this role, you will help advance novel oligonucleotide therapeutics from early discovery toward preclinical development by developing robust in vitro assays, generating high-quality biological data, and contributing to the selection of next-generation therapeutic candidates.

You will be responsible for designing, executing, and optimizing cellular and molecular biology workflows to evaluate oligonucleotide activity, including target engagement, mRNA knockdown, protein modulation, and mechanism of action. Working closely with chemistry, formulation, and translational research teams, you will help evaluate novel oligonucleotide sequences, chemical modifications, and delivery strategies while contributing to the advancement of our oligonucleotide therapeutic platform.

Responsibilities:

Design and synthesize nucleoside analogues, functionalized building blocks, linkers, and conjugates for intracellular delivery applications.

Design and synthesize 2’F nucleoside analogs and related modified nucleoside building blocks for incorporation into oligonucleotides.

Develop and optimize chemistry for 5′-phosphate-modified oligonucleotides, including suitable building blocks, reagents, and on-support or post-synthetic modification workflows as appropriate to the project.

Develop and evaluate molecular strategies for endosomal escape, including approaches to tune charge, hydrophobicity, ionization, degradability, and target-payload association.

Plan and execute multistep synthesis, purification, and structural characterization; troubleshoot challenging reactions and improve routes for reproducibility, yield, and material quality.

Apply appropriate analytical methods to confirm identity, purity, stability, and conjugate composition; maintain clear and complete experimental records.

Drive innovation to improve circulating half-life, tissue penetration, cellular uptake, and intracellular bioavailability of payloads

Present project updates, technical recommendations, and risks to multidisciplinary teams; author reports and contributes to invention disclosures and publications as appropriate.

Collaborate with cross-functional teams including computational chemistry, biology, and pharmacology to drive project success.

Who You Are:

Minimum Qualifications:

PhD in Medicinal Chemistry, Synthetic Organic Chemistry, Chemical Biology, or other Science field with 5+ years of experience in nucleoside chemistry

Preferred Qualifications:

Demonstrated expertise in multistep organic synthesis and a record of delivering complex molecules or conjugates

Practical experience with nucleoside chemistry and/or bioconjugation, linker design, or payload conjugation

Strong understanding of how molecular properties can affect solubility, stability, membrane interaction, cellular uptake, and intracellular trafficking

Familiarity with 5′-end functionalization or phosphorylation chemistry, or the ability to develop and optimize such methods

Proficiency with routine compound characterization and analytical techniques, such as NMR, LC–MS, HPLC, and related methods

Excellent scientific communication, project planning, and problem-solving skills; ability to work independently while contributing to shared goal

Exceptional communication skills with the ability to translate complex data into internally as well as with CRO’s

Pay Range for this position: $112,800 - $169,200

The offer range represents the anticipated low and high end of the base pay compensation for this position. The actual compensation offered will be determined by factors such as location, level of experience, education, skills, and other job-related factors. Position may be eligible for sales or performance-based bonuses. Benefits offered by the Company include health insurance, paid time off (PTO), retirement contributions, and other perquisites. For more information click here .

What we offer: We are curious minds that come from a broad range of backgrounds, perspectives, and life experiences. We believe that this variety drives excellence and innovation, strengthening our ability to lead in science and technology. We are committed to creating access and opportunities for all to develop and grow at your own pace. Join us in building a culture of inclusion and belonging that impacts millions and empowers everyone to work their magic and champion human progress!

Apply now and become a part of a team that is dedicated to Sparking Discovery and Elevating Humanity!

Job details

Seniority
Senior
Function
Drug Discovery & Preclinical Research
Therapeutic area
Not listed
Location
Billerica, Massachusetts, United States
Employment type
Full time

How this role compares

Computed from every other active Drug Discovery & Preclinical Research role in our database, not just this employer's listings.

We currently track 396 comparable Senior Drug Discovery & Preclinical Research roles across 55 biopharma companies.

396Comparable roles tracked
375Currently active
55Companies hiring similar roles
21Countries represented

Salary context

182 of 396 peers report a salary range (USD, annualized)

Peers share this role's job function and a matching or adjacent seniority level -- not necessarily the same therapeutic area or country.

This roleSubject $112,800/yr – $169,200/yr
Lowest disclosed · Senior Primate Behavior Specialist · Labcorp $70,000/yr – $80,000/yr
Highest disclosed · Toxicology Senior Research Fellow · Vertex Pharmaceuticals Inc (US) $232,000/yr – $348,000/yr
Peer group range $75,000 – $290,000 (median $159,125)

Where these roles are based

Top locations among the 396 comparable roles

United States304
China14
India13
United Kingdom9
Switzerland8
Germany7

+ 15 more countries

Seniority mix

396 of 396 peers have a known seniority level

Senior215
Principal149
Associate Director32

Therapeutic area mix

40 of 396 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden

Oncology16
Immunology10
Neuroscience9
Cardiovascular / CVRM4
Vaccines & Infectious Disease1

Similar opportunities

The closest matches from our peer group, ranked by how similar they are, not how well you'd qualify for them -- treat this as market context, not a guaranteed shortlist; a weak match is labeled as one below.

60%similar
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60%similar
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60%similar
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Notify me about similar jobs

Get an email when we spot other openings like this one – same job function, comparable seniority, roles you'd actually want to see.

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How we calculate "similar"

No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.

Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.

60%
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Unmatched or unknown dimensions score exactly the same: 0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.