Vertex Pharmaceuticals Inc (US) Posted September 8, 2026

Medicinal Chemistry Senior Principal Research Scientist

San Diego, United States Full time
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Vertex Pharmaceuticals Inc (US) is the source of truth for this posting and owns the application process. We surface normalized context and market comparison you won't find on the original listing.

About this opportunity

Job Description

Vertex is seeking a Senior Principal Research Scientist, Medicinal Chemistry to provide scientific leadership in the design and optimization of small-molecule therapeutics across discovery programs. Leading from the lab, this role will play a critical part in advancing high-quality drug candidates from early discovery through candidate selection, while partnering across multidisciplinary teams to solve complex scientific challenges.

The ideal candidate is an accomplished medicinal chemist with deep expertise in small-molecule drug discovery, a strong record of scientific innovation, and demonstrated success in a fast-paced and matrixed research environment. This is an on-site role with approximately 75% of time being spent in the lab.

Key Responsibilities

Lead medicinal chemistry strategy for small-molecule discovery programs aligned with portfolio and project objectives.

Design, prioritize, and guide synthesis of novel compounds to optimize potency, selectivity, pharmacokinetics, and developability.

Interpret and integrate SAR, structural biology, DMPK, pharmacology, and safety data to drive compound design and progression.

Partner closely with biology, DMPK, toxicology, and pharmaceutical sciences to advance program goals.

Provide technical and strategic leadership to internal and external chemistry resources.

Provide scientific leadership, mentorship, and development support to chemistry team members.

Communicate program strategy, data, risks, and recommendations to senior leadership and governance teams.

Support intellectual property strategy in partnership with internal stakeholders.

Knowledge and Skills:

Medicinal chemistry

Organic synthesis

Small-molecule drug discovery

Lead optimization

SAR analysis

Compound design

Candidate selection

DMPK/ADME collaboration

Drug property optimization

Patent support

Education and Experience:

Ph.D. in Chemistry or related scientific discipline with 6+ years of relevant postdoctoral industry experience; Master’s degree with 9+ years of relevant industry experience; or Bachelor’s degree with 11+ years of relevant industry experience.

Significant experience in medicinal chemistry and small-molecule drug discovery.

Demonstrated success advancing discovery programs through candidate selection.

Experience leading cross-functional and multidisciplinary teams including in matrixed settings.

Strong communication, strategic thinking, decision-making, prioritization, and problem-solving skills.

#LI-KM1

#LI-Onsite

At Vertex, we embrace continuous learning and encourage employees to stay informed on advances in AI, technology, automation, and industry trends. We seek talent who bring an external perspective, demonstrate curiosity and sound judgment, and thoughtfully adopt new capabilities that improve decision-making, drive innovation, increase efficiency, and help deliver better outcomes for patients.

Pay Range:

$164,400 - $246,600

Disclosure Statement:

The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.

At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations.  From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.

Flex Designation:

On-Site Designated

Flex Eligibility Status:

In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility.

Note: The Flex status for this position is subject to Vertex’s Policy on Flex @ Vertex Program and may be changed at any time.

#LI-Onsite

Company Information

Vertex is a global biotechnology company that invests in scientific innovation.

Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.

Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

Job details

Seniority
Principal
Function
Drug Discovery & Preclinical Research
Therapeutic area
Not listed
Location
San Diego, United States
Employment type
Full time

How this role compares

Computed from every other active Drug Discovery & Preclinical Research role in our database, not just this employer's listings.

We currently track 458 comparable Principal Drug Discovery & Preclinical Research roles across 54 biopharma companies.

458Comparable roles tracked
425Currently active
54Companies hiring similar roles
21Countries represented

Salary context

226 of 458 peers report a salary range (USD, annualized)

Peers share this role's job function and a matching or adjacent seniority level -- not necessarily the same therapeutic area or country.

This roleSubject $164,400/yr – $246,600/yr
Lowest disclosed · Senior Animal Behaviorist - Primate · Labcorp $70,000/yr – $80,000/yr
Peer group range $75,000 – $322,000 (median $169,150)

Where these roles are based

Top locations among the 458 comparable roles

United States339
China22
India16
United Kingdom11
Switzerland10
Germany9

+ 15 more countries

Seniority mix

458 of 458 peers have a known seniority level

Senior227
Principal170
Director61

Therapeutic area mix

59 of 458 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden

Immunology19
Oncology18
Neuroscience15
Cardiovascular / CVRM3
Vaccines & Infectious Disease1
Respiratory1
Gastroenterology1
Dermatology & Aesthetics1

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How we calculate "similar"

No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.

Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.

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Unmatched or unknown dimensions score exactly the same: 0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.