Vertex Pharmaceuticals Inc (US) Posted September 8, 2026

Computational Chemistry Principal Research Scientist (Computational Drug Design)

Boston, United States Full time
Notify me about similar jobs

Vertex Pharmaceuticals Inc (US) is the source of truth for this posting and owns the application process. We surface normalized context and market comparison you won't find on the original listing.

About this opportunity

Job Description

We are seeking a highly motivated and experienced computational chemist to join our Computational Drug Design group in Boston. This individual will be responsible for contributing to both hit/lead identification and optimization programs using a broad range of computational approaches including molecular modeling, cheminformatics, data science, and AI-enabled methods. The right candidate's responsibilities include close interaction with interdisciplinary projects teams to identify and advance safe and efficacious molecules. In addition, this individual will work collaboratively within the global Data and Computational Sciences group to provide expertise in data analysis, computational chemistry and AI method development. This individual must demonstrate strong interpersonal skills and the ability to guide scientists in drug discovery.

This is a Boston based, hybrid position requiring 3 days/week onsite.

Key Duties and Responsibilities:

Apply computational chemistry methods and tools to accelerate the discovery and design of drug candidates.

Provide strategic scientific leadership across multiple discovery programs and influence computational design approaches across the organization.

Partner with medicinal chemists and other research team members to generate design hypotheses and use predictions to drive experimental decision making.

Integrate structural, biological, and ADME/DMPK data to optimize compound profiles.

Evaluate, apply, and help advance AI-enabled approaches for molecular design, prediction, and decision support in drug discovery

Communicate findings and recommendations to project and functional teams as well as leadership.

Mentor junior scientists and contribute to computational best practices.

Knowledge and Skills:

Excellent interpersonal, communication and presentation skills

In depth knowledge of state-of-the-art computational chemistry and its application in drug discovery

Experience with commercial and open-source molecular modeling software

Knowledge of concepts related to drug discovery and development

Strong solution-oriented attitude, spirit of innovation and creativity, good time and priority management

Scripting and programming expertise in languages such as Python

Education and Experience:

Ph.D. (or equivalent degree) in Computational Chemistry and 6++ years of productive, relevant employment experience in computational drug design, with demonstrated progression in scientific leadership

Strong expertise in structure-based drug design and optimization of small molecules; experience with beyond-rule-of-five modalities is desirable

Experience leveraging modern AI computational capabilities for both design and discovery workstreams

Proven success influencing design and discovery strategy

Strong programming, data analysis, and communication skills

#LI-KM1

#LI-Hybrid

At Vertex, we embrace continuous learning and encourage employees to stay informed on advances in AI, technology, automation, and industry trends. We seek talent who bring an external perspective, demonstrate curiosity and sound judgment, and thoughtfully adopt new capabilities that improve decision-making, drive innovation, increase efficiency, and help deliver better outcomes for patients.

Pay Range:

$144,800 - $217,200

Disclosure Statement:

The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.

At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations.  From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.

Flex Designation:

Hybrid-Eligible Or On-Site Eligible

Flex Eligibility Status:

In this Hybrid-Eligible role, you can choose to be designated as:

1.    Hybrid: work remotely up to two days per week; or select

2.    On-Site: work five days per week on-site with ad hoc flexibility.

Note: The Flex status for this position is subject to Vertex’s Policy on Flex @ Vertex Program and may be changed at any time.

#LI-Hybrid

Company Information

Vertex is a global biotechnology company that invests in scientific innovation.

Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.

Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

Job details

Seniority
Principal
Function
Drug Discovery & Preclinical Research
Therapeutic area
Not listed
Location
Boston, United States
Employment type
Full time

How this role compares

Computed from every other active Drug Discovery & Preclinical Research role in our database, not just this employer's listings.

We currently track 458 comparable Principal Drug Discovery & Preclinical Research roles across 54 biopharma companies.

458Comparable roles tracked
425Currently active
54Companies hiring similar roles
21Countries represented

Salary context

226 of 458 peers report a salary range (USD, annualized)

Peers share this role's job function and a matching or adjacent seniority level -- not necessarily the same therapeutic area or country.

This roleSubject $144,800/yr – $217,200/yr
Lowest disclosed · Senior Animal Behaviorist - Primate · Labcorp $70,000/yr – $80,000/yr
Peer group range $75,000 – $322,000 (median $169,150)

Where these roles are based

Top locations among the 458 comparable roles

United States339
China22
India16
United Kingdom11
Switzerland10
Germany9

+ 15 more countries

Seniority mix

458 of 458 peers have a known seniority level

Senior227
Principal170
Director61

Therapeutic area mix

59 of 458 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden

Immunology19
Oncology18
Neuroscience15
Cardiovascular / CVRM3
Vaccines & Infectious Disease1
Respiratory1
Gastroenterology1
Dermatology & Aesthetics1

Similar opportunities

The closest matches from our peer group, ranked by how similar they are, not how well you'd qualify for them -- treat this as market context, not a guaranteed shortlist; a weak match is labeled as one below.

60%similar
Lilly Indianapolis, Indiana, United States of America Principal
Same function Same seniority Same country
60%similar
Lilly Indianapolis, Indiana, United States of America Principal
Same function Same seniority Same country
60%similar
Lilly Indianapolis, Indiana, United States of America Principal
Same function Same seniority Same country
60%similar
AbbVie North Chicago, IL Principal
Same function Same seniority Same country
60%similar
AbbVie North Chicago, IL Principal
Same function Same seniority Same country
60%similar
AbbVie San Francisco, CA Principal
Same function Same seniority Same country

Notify me about similar jobs

Get an email when we spot other openings like this one – same job function, comparable seniority, roles you'd actually want to see.

Or follow a whole field: get every new Drug Discovery & Preclinical Research job in the United States, and choose locations and companies.

How we calculate "similar"

No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.

Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.

60%
Advisor / Senior Advisor, CNS/PNS NAMs – Investigative Toxicology
Lilly · Indianapolis, Indiana, United States of America · Principal
Function Therapeutic area Seniority Country
60%
Senior Principal Research Scientist Engineering
AbbVie · North Chicago, IL · Principal
Function Therapeutic area Seniority Country
60%
Principal Research Scientist I, In Vivo Antibody Discovery
AbbVie · Worcester, MA · Principal
Function Therapeutic area Seniority Country
60%
Principal Scientist I
Novartis · Cambridge (USA), United States · Principal
Function Therapeutic area Seniority Country
Unmatched or unknown dimensions score exactly the same: 0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.