Lilly Posted August 17, 2026

Automation & Computer Systems Administration Engineer

Indianapolis, Indiana, United States of America FULL_TIME
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About this opportunity

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work, but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.

Overview

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We’re looking for people who are determined to make life better for people around the world.

Position Summary

The BioProcess Research and Development (BRD) organization is responsible for developing and manufacturing large molecule drug substance in support of Lilly’s drug development pipeline. BRD Automation supports the BRD mission by developing automation solutions and providing process control engineering for the control of bioprocess systems from 5L benchtop to 5000L GMP production scale as well as process support systems.

The BRD a utomation and computer systems administration engineer will enable information and data flow by leveraging Process Automation and IT Technologies with a focus on data historians and analytics. The role works with scientists and engineers to establish data management architecture, and provide system administration oversight that enables process development, clinical supply manufacture, and process tech transfer to commercial sites. This role includes change control implementation, deviation investigation, troubleshooting process control systems, network architecture support, and off-hours support. The role supports laboratory, K360 pilot plant and GMP manufacturing areas. The position will serve as the subject matter expert for the AVEVA PI systems and will provide backup support and system administration for process control system platforms such as DeltaV, Unicorn, and Rockwell.

Key Objectives / Deliverables

Data Historians – Provide support for the BRD data historian platform and drive value and productivity by developing and implementing solutions using the AVEVA PI System.

Data Integration – Develop robust and innovative solutions enabling scientists and engineers to utilize data to drive improvement decisions, identify issues, and utilize advanced analytics.

Innovation – Bring external and innovation focus, combined with a strong understanding of business objectives, emerging technologies and IT/Automation applications to define the future state and vision for development.

Process Understanding – Obtain and leverage knowledge of the BRD business processes and technologies to influence future application and business direction.

Process Improvement/Optimization – Utilize data analytics to find, develop, and implement automation solutions driving productivity gains, safety improvements, quality improvements, and other process improvements.

Project Delivery – Lead design and delivery of local projects. Provide appropriate project execution support. Ensure that solutions are compliant to minimize regulatory risk to the business. Oversight of contractors assisting in the delivery of solutions is required.

System Support – Provide technical support for process control system platforms (e.g. AVEVA PI, DeltaV, Unicorn, Rockwell) as well as perform system support activities (e.g. performance monitoring, cyber security), and network architecture layering support. Lead investigation of automation related deviations. Responsible for ensuring that lifecycle plans are developed and executed for automation systems.

Additional Responsibilities

Complete documentation and testing activities to ensure that systems are maintained in the appropriate state of validation for use.

Lead investigation of automation related deviations and process upsets.

Oversight of contractors assisting in the delivery of automation solutions.

Provide project management and technical leadership for projects.

Ensure that automation solutions are compliant to minimize regulatory risk to the business.

Basic Qualifications

Bachelor’s degree in engineering, computer science or related discipline with 3+ years' relevant experience.

PhD will not be considered at this job level.

Experience in process data historian configuration and/or use

System administration and network communications experience

Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.

Additional Skills / Preferences

Experience on AVEVA PI Data Historian or other server-based historian systems

Familiarity with firewall configurations and network infrastructure

Experience working with validated systems in a GMP environment

Experience in supporting a manufacturing or development site

Experience working with one or more process automation systems (DeltaV, Unicorn, Rockwell)

Familiarity with data system architectures, operating systems, applications and interfaces

Strong problem identification and resolution skills

Excellent self-management skills

Ability to work well in a team environment incorporating a variety of functional relationships

Additional Information

Monday through Friday 8-hour days with flexibility to provide occasional off-hours support.

Tasks require entering manufacturing or laboratory areas which require wearing appropriate PPE.

Travel: 0-10%

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form ( https://careers.lilly.com/us/en/workplace-accommodation ) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.

Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).

Actual compensation will depend on a candidate’s education, experience, skills, and geographic location.  The anticipated wage for this position is

$66,000 - $149,600

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

#WeAreLilly

Job details

Seniority
Not listed
Function
Manufacturing & CMC
Therapeutic area
Not listed
Location
Indianapolis, Indiana, United States of America
Employment type
FULL_TIME

How this role compares

Computed from every other active Manufacturing & CMC role in our database, not just this employer's listings.

We currently track 2526 comparable Manufacturing & CMC roles across 157 biopharma companies.

2526Comparable roles tracked
2230Currently active
157Companies hiring similar roles
61Countries represented

Salary context

638 of 2526 peers report a salary range (USD, annualized)

Peers share this role's job function. This posting doesn't list a seniority level, so peers aren't narrowed by seniority either -- the range below may span more levels than usual.

This roleSubject $66,000/yr – $149,600/yr
Lowest disclosed · Sr Manufacturing Technician · Genz. Therap Product LP $2,400/yr – $3,200/yr
Highest disclosed · Executive Director, CMC Regulatory Science · ModernaTX, Inc. $224,900/yr – $404,600/yr
Peer group range $2,800 – $314,750 (median $122,924)

Where these roles are based

Top locations among the 2526 comparable roles

United States1157
India165
Germany152
Switzerland89
France89
Netherlands87

+ 55 more countries

Seniority mix

1056 of 2526 peers have a known seniority level

Senior320
Manager267
Associate129
Principal99
Associate Director90
Director86
Senior Director33
Intern/Fellow/Postdoc26
Executive/VP6

Therapeutic area mix

5 of 2526 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden

Rare Disease2
Vaccines & Infectious Disease1
Oncology1
Respiratory1

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How we calculate "similar"

No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.

Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.

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Unmatched or unknown dimensions score exactly the same: 0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.