Lilly Posted October 8, 2026

Advisor – Engineering – Drug Substance

Indianapolis, Indiana, United States of America FULL_TIME
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About this opportunity

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work, but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.

Lilly’s Synthetic Molecule Design and Development (SMDD) is involved in key activities for the development of active pharmaceutical ingredients and formulated drug products from pre-clinical phases through commercialization of drug substances and drug products for small molecules, synthetic oligonucleotides, and synthetic peptides. Our scientists develop key technical and business solutions across the portfolio using their deep technical expertise to speed up testing of the clinical hypothesis and overall drug development.  SMDD tackles this diversity of responsibilities by recognizing that an even greater diversity of talents and cultures is necessary to deliver the next generation of life changing medicines to patients.

SMDD is seeking outstanding engineering candidates to work within the process design and development team. The position presents an opportunity to work side by side with chemists, analytical chemists, formulation scientists and other engineers to develop new technical solutions to accelerate our exciting portfolio. Candidates must demonstrate a history of strong technical depth, scientific leadership, and a willingness to promote a collaborative, team-based approach to problem solving.

Responsibilities:

Apply engineering fundamentals to design and optimize chemical processes for small molecules, oligonucleotides, and synthetic peptides, ensuring robust, scalable processes that reliably supply clinical trial materials.

Design and execute lab experiments using knowledge of reaction kinetics, heat/mass transfer, thermodynamics, fluid dynamics, and process modeling to support error-free scale-up.

Develop proficiency across a broad range of unit operations, including crystallization, filtration, drying, milling, and batch/continuous chemistry, to assemble complete synthetic manufacturing processes.

Serve on integrated commercialization teams to collaboratively develop, test, and oversee process execution from lab scale through manufacturing facilities.

Operate with full compliance within a regulated industry, adhering to applicable regulations, guidelines, SOPs, and safety procedures governing drug research and development.

Collaborate cross-functionally with analytical, formulation, quality, regulatory, and environmental/safety teams to ensure comprehensive process development and compliance.

Oversee scale-up and technology transfer to internal and external manufacturing sites through team meetings, site visits, and ongoing process monitoring.

Maintain a continuous learning mindset by engaging with relevant literature, professional organizations, and the broader scientific community through publications and conference presentations.

With experience, provide mentorship to junior scientists and engineers while driving documentation and broad sharing of new technologies, methodologies, and process control strategies.

Foster an inclusive, collaborative environment that encourages diverse perspectives to deliver innovative solutions to unmet technical challenges.

Education Requirements:

PhD in Chemical Engineering

MSc in Chemical Engineering +7 years of experience in chemical/pharmaceutical process development

BSc in Chemical Engineering +10 years of experience in chemical/pharmaceutical process development

Additional Skills and Preferences:

Experience with design, development, and optimization of synthetic process manufacturing unit operations.

Experience with modeling and simulation tools, data analytics and predictive analytics.

Experience in batch and continuous unit operations.  Experience on technical considerations for equipment design and integration, process monitoring, integration of process analytical technologies (PAT) systems.

Excellent oral communication and documentation skills.

Demonstrate ability to effectively collaborate with multidisciplinary teams.

Demonstrate leadership behaviors with ability to accept challenges, seek opportunities to remove barriers, influence without authority, and lead in areas of uncertainty

Demonstrate exemplary teamwork/interpersonal skills

Demonstrate problem solving, attention to detail and result oriented behaviors in a fast-paced environment.

Additional Information

Travel:  0 to 10%

Position Local:  Indianapolis, IN LTC- N

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form ( https://careers.lilly.com/us/en/workplace-accommodation ) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.

Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).

Actual compensation will depend on a candidate’s education, experience, skills, and geographic location.  The anticipated wage for this position is

$129,000 - $209,000

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

#WeAreLilly

Job details

Seniority
Associate
Function
Manufacturing & CMC
Therapeutic area
Not listed
Location
Indianapolis, Indiana, United States of America
Employment type
FULL_TIME

How this role compares

Computed from every other active Manufacturing & CMC role in our database, not just this employer's listings.

We currently track 801 comparable Associate Manufacturing & CMC roles across 95 biopharma companies.

801Comparable roles tracked
728Currently active
95Companies hiring similar roles
40Countries represented

Salary context

173 of 801 peers report a salary range (USD, annualized)

Peers share this role's job function and a matching or adjacent seniority level -- not necessarily the same therapeutic area or country.

This roleSubject $129,000/yr – $209,000/yr
Lowest disclosed · Warehouse Associate I (M-F 11am-7:30pm) · AbbVie $16/hr – $29/hr (≈ $33,280–$60,320/yr)
Highest disclosed · Regional Manager - Megasys · Merck KGaA $220,000/yr – $250,000/yr
Peer group range $46,800 – $235,000 (median $139,250)

Where these roles are based

Top locations among the 801 comparable roles

United States408
India56
France52
Germany43
Ireland31
Switzerland25

+ 34 more countries

Seniority mix

801 of 801 peers have a known seniority level

Manager381
Intern/Fellow/Postdoc259
Associate161

Therapeutic area mix

13 of 801 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden

Vaccines & Infectious Disease9
Rare Disease3
Immunology1

Similar opportunities

The closest matches from our peer group, ranked by how similar they are, not how well you'd qualify for them -- treat this as market context, not a guaranteed shortlist; a weak match is labeled as one below.

60%similar
Lilly Indianapolis, Indiana, United States of America Associate
Same function Same seniority Same country
60%similar
Lilly Indianapolis, Indiana, United States of America Associate
Same function Same seniority Same country
60%similar
Devens Devens, United States Associate
Same function Same seniority Same country
60%similar
Biogen Research Triangle Park, United States Associate
Same function Same seniority Same country
60%similar
Lilly San Diego, California, United States of America Associate
Same function Same seniority Same country
60%similar
Lilly Houston, Texas, United States of America Associate
Same function Same seniority Same country

Notify me about similar jobs

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How we calculate "similar"

No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.

Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.

60%
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Function Therapeutic area Seniority Country
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Unmatched or unknown dimensions score exactly the same: 0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.