Postdoctoral Scientist, Biophysics
About this opportunity
At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work, but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.
Organization Overview:
For 150 years, scientists at Lilly have worked diligently to develop medicines that make life better for patients. These discoveries start in the Lilly Research Laboratories, where our scientists solve complex problems to develop new medicines that will help solve our world's greatest health challenges. We are looking for a highly motivated Postdoctoral Biophysical Chemist to join a cross-functional team in Indianapolis, IN to support our small molecule Early Molecule Discovery (EMD). Our team integrates biophysical and structural methods with computational approaches (i.e. quantum mechanics, molecular dynamics, free energy calculations, and AI/ML) to accelerate the identification and advancement of molecules to develop medicines.
Responsibilities:
The successful candidate will join an interactive, collaborative, and innovative cross-functional team to develop and apply integrative biophysical and computational methods that accelerate the discovery of new medicines.
Execute biophysical and biomolecular NMR experiments to explore biomolecular energy landscapes and conformations.
Integrate experimental data with advanced quantum mechanical calculations, molecular dynamics simulations and free energy calculations to study protein motion, protein-ligand interactions, and protein-protein interactions in support of structure-based drug design.
Develop and implement novel AI and neural networks for analyzing experimental and molecular dynamics simulations into integrated structural models.
Script and automate workflows across computational software platforms to maximize throughput and reproducibility of molecular calculations.
Stay current with emerging methods in computational drug discovery, including AI and machine learning models for ligand binding and model building.
Maintain critical timelines and communicate progress clearly through oral and written presentations at internal and external team meetings.
Collaborate with discovery scientists to advance portfolio molecules from leads to quality drug candidates.
Basic Requirements:
Ph.D. in Biophysical Chemistry, Biophysics, Computational Chemistry, or a related field.
Strong foundation in biomolecular NMR with expertise in protein structure and dynamics.
Demonstrated experience integrating experimental data with molecular dynamics.
Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.
Additional Skills/Preferences:
Experience in generative AI, especially building and training neural networks (CNN, GNN, etc.)
Experience with molecular dynamics simulations, quantum mechanical or free energy calculation methods applied to protein-ligand systems
Proficiency in Python and/or other scientific scripting and programming languages
Ability to work effectively both independently and in a collaborative team environment
Experience working on an HPC or Cloud computing environment
Experience integrating structural biology data (cryo-EM, X-ray crystallography, NMR or AI-predicted structures) with computational models
Strong interpersonal, organizational, and problem-solving skills
Additional Information:
This is an onsite position based in Indianapolis, Indiana
This position is not permanent. It is a fixed-term position up to 2 years.
Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form ( https://careers.lilly.com/us/en/workplace-accommodation ) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.
Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.
Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).
Actual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is
$58,000 - $123,200
Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.
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Job details
How this role compares
Computed from every other active Drug Discovery & Preclinical Research role in our database, not just this employer's listings.
We currently track 56 comparable Intern/Fellow/Postdoc Drug Discovery & Preclinical Research roles across 17 biopharma companies.
Salary context
17 of 56 peers report a salary range (USD, annualized)
Peers share this role's job function and a matching or adjacent seniority level -- not necessarily the same therapeutic area or country.
Where these roles are based
Top locations among the 56 comparable roles
Seniority mix
56 of 56 peers have a known seniority level
Therapeutic area mix
9 of 56 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden
Similar opportunities
The closest matches from our peer group, ranked by how similar they are, not how well you'd qualify for them -- treat this as market context, not a guaranteed shortlist; a weak match is labeled as one below.
How we calculate "similar"
No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.
Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.
0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.