Lilly Posted June 24, 2026

Senior Principal Engineer - Automation Engineering – Hybrid Manufacturing - Lilly Medicine Foundry

Lebanon, Indiana, United States of America FULL_TIME
Manufacturing & CMC Principal

Lilly is the source of truth for this posting and owns the application process. We surface normalized context and market comparison you won't find on the original listing.

About this opportunity

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work, but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.

Lilly recently announced a $4.5 billion investment to create the Lilly Medicine Foundry, a new center for advanced manufacturing and drug development. The first-ever facility of its kind, combining research and manufacturing in a single location, the Medicine Foundry will allow Lilly to further develop innovative solutions to optimize manufacturing processes and increase capacity for clinical trial medicines, while also reducing costs and environmental impact.

The Senior Principal Engineer - Automation Engineering will work as a member of the Automation Engineering Department at Eli Lilly, Foundry. The engineer will provide automation support for one or more operating areas across site and/or for capital projects. Process Automation is core to delivering the right first-time facility start up and continued support of ongoing manufacturing operations into the future.

The Senior Principal Engineer is also responsible for the productivity and mentorship of their peers with the purpose of ensuring that reliable and compliant control applications and systems are used in the manufacturing at Foundry.  Additionally, the Senior Principal Engineer as a key technical expert with partners to influence and implement within the process control organization and across functional disciplines to support the process control technical agenda, business plan priorities, and compliance objectives.

In the project delivery phase and startup phase of the project (startup expected 2026 to 2029), automation engineering roles will be fluid and dynamic as we endeavor to support the project delivery, build a new organization, develop and implement the necessary systems and business processes required to support GMP operations, and build the site culture. This will require significant collaboration, creativity and resilience as the site grows to a full scale GMP manufacturing through start up.

Key Objectives/Deliverables:

Technical Leadership - Lead capital project execution, Design, Development, commissioning & qualification and support.

Lead and oversee the work of Site Area leads and System Integrators.

Lead/Participate in design reviews and DeltaV application software reviews, attend equipment and software FATs.

Develop functional requirements and process control strategies for control systems in collaboration with Process Engineering.

Translate technical concepts for executive audience and/or non-technical stakeholders.

Develop and implement the Automation Engineering Project Plan.

Promote the use of Digital innovation and automation to enhance efficiency of team functions.

Maintain validated state of the process control system application software.

Operational Excellence

System level thinking and expertise working with multi-disciplinary teams.

Deep Expertise working with DeltaV Distributed Control System, Rockwell Allen Bradley PLC and Batch Process Automation.

Thorough understanding of 21CFR Part 11, GMP processes.

Provide periodic status updates to Project Management.

Lead/Participate in design reviews and Site system hardware reviews, attend equipment and FATs.

Promote the use of Digital Innovation and automation to improve productivity, operational efficiency and compliance.

Experience in clinical-stage manufacturing with flexible, multi-product capabilities is preferred.

Thorough understanding of various process control communication protocols.

Developing a ‘network’ of corporate contacts and leveraging corporate expertise when needed.

Provide On-call support for operations, as needed.

Organizational Capability

Mentor process control team to strengthen technical capabilities and adopt best practices to enhance system reliability and business continuity.

Be a fully active member of the flow leadership in running the plant, including participation on technical sub-teams.

Possess a keen technical curiosity and has demonstrated strong problem-solving skills and a desire for continuous improvement.

Demonstrated initiative, good planning and organizational skills, ability to prioritize tasks, commitment to task completion and timelines.

Demonstrated ability to influence peers and business partners, influence without authority.

In coordination with automation and compliance consultants, set and reinforce standards for appropriate rigor in automation work products.

Basic Requirements:

Minimum B.S. in Engineering, with 8+ years working experience in Biopharma Automation Engineering, preferably in major pharmaceutical manufacturing.

Experience working in Biotech or Small Molecule manufacturing using DeltaV batch are a must.

Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.

Additional Preferences:

Experience in design, development, commissioning and qualification of highly automated greenfield manufacturing sites utilizing SCADA, DCS, PLC and MES systems ( DeltaV , Rockwell, Syncade , etc ).

Experience in facilitating and driving decision-making at an organizational level.

Other Information:

Initial location at Parkwood West, Indianapolis, Indiana.

Permanent location at the new Lilly Medicine Foundry in Lebanon, Indiana.

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form ( https://careers.lilly.com/us/en/workplace-accommodation ) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.

Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).

Actual compensation will depend on a candidate’s education, experience, skills, and geographic location.  The anticipated wage for this position is

$64,500 - $167,200

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

#WeAreLilly

Job details

Seniority
Principal
Function
Manufacturing & CMC
Therapeutic area
Not listed
Location
Lebanon, Indiana, United States of America
Employment type
FULL_TIME

How this role compares

Computed from every other active Manufacturing & CMC role in our database, not just this employer's listings.

We currently track 393 comparable Principal Manufacturing & CMC roles across 56 biopharma companies.

393Comparable roles tracked
368Currently active
56Companies hiring similar roles
19Countries represented

Salary context

188 of 393 peers report a salary range (USD, annualized)

Peers share this role's job function and a matching or adjacent seniority level -- not necessarily the same therapeutic area or country.

This roleSubject $64,500/yr – $167,200/yr
Lowest disclosed · Senior Scientist II – CMC Developmental Sciences · AbbVie $0/hr – $0/hr (≈ $0–$0/yr)
Highest disclosed · Director, Global Automation Engineering · AbbVie $182,000/yr – $346,000/yr
Peer group range $0 – $264,000 (median $150,600)

Where these roles are based

Top locations among the 393 comparable roles

United States282
India42
Singapore10
Ireland9
Netherlands7
Switzerland6

+ 13 more countries

Seniority mix

393 of 393 peers have a known seniority level

Senior251
Principal78
Director64

Therapeutic area mix

2 of 393 peers have a known therapeutic area; the rest are genuinely unlabeled, not hidden

Oncology1
Vaccines & Infectious Disease1

Similar opportunities

The closest matches from our peer group, ranked by how similar they are, not how well you'd qualify for them -- treat this as market context, not a guaranteed shortlist; a weak match is labeled as one below.

60%similar
Lilly Indianapolis, Indiana, United States of America Principal
Same function Same seniority Same country
60%similar
Lilly Louisville, Colorado, United States of America Principal
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60%similar
Lilly Indianapolis, Indiana, United States of America Principal
Same function Same seniority Same country
60%similar
Lilly Watertown, Massachusetts, United States of America Principal
Same function Same seniority Same country
60%similar
Lilly Indianapolis, Indiana, United States of America Principal
Same function Same seniority Same country
60%similar
Lilly Indianapolis, Indiana, United States of America Principal
Same function Same seniority Same country

How we calculate "similar"

No black box, no LLM guesswork: a deterministic score built from four normalized attributes. Here's this role's own peer group at different match levels, so you can see the mechanism, not just the result.

Every comparison starts from the same 100-point budget: 25 for working in the same function, 40 for the same therapeutic area, 20 for the same or adjacent seniority, 15 for the same country. A dimension we can't confirm on both sides contributes nothing, never a guess, never a free pass.

60%
Senior/Principal Scientist, Bioprocess Purification Development
Lilly · Indianapolis, Indiana, United States of America · Principal
Function Therapeutic area Seniority Country
60%
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Merck · Rahway, New Jersey, United States of America · Principal
Function Therapeutic area Seniority Country
Unmatched or unknown dimensions score exactly the same: 0 points, never a partial guess. A role we know almost nothing about beyond its function bottoms out at 25%; it never inflates to 100% just because there's little to compare against. Seniority uses a defined ladder (Associate → Manager → Associate Director → Senior → Principal → Director → Senior Director → Executive/VP) so "Director" and "Senior Director" count as adjacent, but "Director" and "Executive/VP" do not.